- Institute of Physics
- Institute of Control Systems
- Institute of Mathematics and Mechanics
- Institute of Radiation Problems
- Shamakhy Astrophysical Observatory
- Institute of Information Technology
- Institute of Petrochemical Processes
- Institute of Catalysis and Inorganic Chemistry
- Institute of Chemistry of AdditivesInstitute of Polymer Materials
- Institute of Geography
- Institute of Geology and Geophysics
- Institute of Molecular Biology and Bio technologies
- Institute of Botany
- Institute of Zoology
- Institute of Physiology
- Institute of Microbiology
- The Central Botanical Garden
- Institute of Dendrology
- Institute of Soil Science and Agro Chemistry
- Institute of Genetic Resources
- Institute of Irrigation and Erosion
- Institute of Manuscripts
- Institute of Architecture and Art
- Institute of Folklore
- National Museum of Azerbaijan Literature
- Institute of Literature
- Institute of Linguistics named after Nasimi
- Huseyn Javid Museum
- Institute of Archaeology and Etnography
- Institute of Philosophy and Law
- Institute of Economy
- Research Institute for Human RightsInstitute of the History of Science
- Institute of Caucasian study
- National Museum of Azerbaijan History
- Institute of History
- Institute of Oriental Studies
- Nakhchivan department of ANAS
- Ganja department of ANAS
- Lankaran scientific center of ANAS
- Sheki scientific center of ANAS
- Quba scientific center of ANAS